Not sure if it was asked here before, but, can you...
# nf-teste
Evangelos Karatzas
11/14/2025, 12:05 PMNot sure if it was asked here before, but, can you nf-test the new workflow syntax output stuff with nf-test? How would you do that in an nf-core pipeline end-to-end default.nf.test?
m
Maxime Garcia
11/17/2025, 9:33 AMso the new workflow output can work with nf-test
Maxime Garcia
11/17/2025, 9:33 AMI did it in #C073ZDLNC92
Maxime Garcia
11/17/2025, 9:34 AMi just added:
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options "-output-dir $outputDir"e
Evangelos Karatzas
11/17/2025, 9:43 AMOooh niceee! That needs to go to the nf-test documentation definitely!!
Evangelos Karatzas
11/17/2025, 9:44 AMLet me try with my pipeline as well
Evangelos Karatzas
11/17/2025, 9:49 AMIt works!! I don't understand why, but it works xD
Evangelos Karatzas
11/17/2025, 9:49 AMI mean this:
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when {
params {
outdir = "$outputDir"
}
}m
Maxime Garcia
11/17/2025, 9:50 AMI added this also just to be sure: https://github.com/nf-core/references/blob/dev/nextflow.config#L55
Maxime Garcia
11/17/2025, 9:51 AMAnd I'd say it's some config priority logic
Maxime Garcia
11/17/2025, 9:51 AMI don't remember how I ended up doing that
e
Evangelos Karatzas
11/17/2025, 9:51 AMyou genius
🙏 1
m
Maxime Garcia
11/17/2025, 9:52 AMjust needed to try things until it work
Maxime Garcia
11/17/2025, 9:52 AMI'm always good to find a quick hack
❤️ 1