A community effort to collect a curated set of analysis pipelines built using Nextflow.

nf-core

Hello, at my workplace we use nextflow as the main pipeline manager. There is a variant calling pipeline which run some other bam preprocessing pipeline from a github repository like `nextflow run org/bam-processing` and nextflow then pulls the repo and runs bam processing as a step in variant calling. 

Now, I am developing a new pipeline which has the same bam processing step and I would like to run it via the <http://main.nf|main.nf> file in my new pipeline. Can someone please let me know what is the best way to do it?

Sounds like you're talking about <#C07ACNLELR2|>

So what I understand from the discussions is that chaining pipelines together is an upcoming feature in nextflow and right now that feature is not supported. Right?

And the feature will be implemented in nextflow v26.04? And is under testing already:disguised_face:

uhmm, sort of, I'm not sure that I would phrase it with quite such certainty :sweat_smile:

In order to make my pipeline work, will I have to write a bash script:face_with_spiral_eyes:?

Let's take this in <#C07ACNLELR2|> instead of <#CE56GDKN0|>, more eyes there