Hello! When I use the `dev` version and use `sup`...
# methylong
l
Hello! When I use the
dev
version and use
sup
model instead of the default
hac
i.e.,
--dorado_model sup
then I get the error below,
[error] Must set --data when using automatic model detection
. Any tips to fix this please, thanks!! 🙏
N.B. When the default
--dorado_model hac
is used, the pipeline finishes successfully.
y
Thank u for raising the issue, there is indeed a mistake here. If you're in a hurry, you can modify the code in
modules/local/dorado/basecaller/main.nf
, and change the line 26 code to the following:
${!(dorado_model in ['hac','sup']) ? "dorado download --model $dorado_model" : ""}
We will fix this issue in the next version, though it may take some time.
thankyou 1
l
Thanks!!