A community effort to collect a curated set of analysis pipelines built using Nextflow.

nf-core

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Hi, I am trying to run AIRRFLOW on bulk fastq.gz files of light-chain sequences (without heavy-chains). I get an error saying that I need the column "cell_id".
By looking further, I can see 'cell_id' column is not mentioned in the bulk usage, however it is mentioned in the single cell usage.
How do I fix this issue? My inputsample file looks like this:
Let me know if you need further information, thank you

This is the command I run for the analysis:

`nextflow run nf-core/airrflow -r 4.3.0 \`
`-profile clontech_umi_bcr,singularity \`
`--input /x/x/x/x/x/Light_Chain.tsv \`
`-c /x/x/x/x/resources.config \`
`--outdir /x/x/x/x/x/AIRRFLOW_results \`
`-resume \`
`--clonal_threshold 0.15`

And for some reason I have to add the --clonal_threshold 0.15 for the lightchain sequencing data, otherwise it complains that it cant auto calulate this.

I have no issues running the same analysis on the Heavy-Chain sequencing data (however for that I run without the --clonal_threshold parameter)