A community effort to collect a curated set of analysis pipelines built using Nextflow.

nf-core

As you note; this flag *does* exist in `simpleaf` and so can be provided. I’m not sure about through the wrappers.

Right, so.. How? Someone must have figured this out already, I'd imagine

For <#CE8SSJV3N|> there is a parameter you can pass like `extra_salmon_quant_args` so you can specify stuff like `--seqBias --gcBias` . This can also be specified in the custom yaml config

It would be great to have a parameter like this here, e.g. `extra_simpleaf_quant_args` that get passed in to the main `SIMPLEAF_QUANT`module