Daniel Lundin
09/16/2025, 8:26 AMwget module in #C01U1E95JQ5. It uses a Wave container: community.wave.seqera.io/library/wget:1.21.4--8b0fcde81c17be5e. With Docker, name resolution fails. Perhaps not all the time, but most of the time. (We're using the same container in a module in #C02FC6VFQG1 and, AFAIK, this works but I haven't stress tested this.)
$ docker run <http://community.wave.seqera.io/library/wget:1.21.4--8b0fcde81c17be5e|community.wave.seqera.io/library/wget:1.21.4--8b0fcde81c17be5e> wget <https://www.lnu.se>
--2025-09-16 08:09:35-- <https://www.lnu.se/>
Resolving <http://www.lnu.se|www.lnu.se> (<http://www.lnu.se|www.lnu.se>)... failed: Temporary failure in name resolution.
wget: unable to resolve host address '<http://www.lnu.se|www.lnu.se>'
I tried also with a Biocontainer, and get the same failure. Running the command directly, i.e. without Docker, works fine.
Running the pipeline with -profile conda also works fine.James Fellows Yates
09/16/2025, 8:39 AMaria2 insteadJames Fellows Yates
09/16/2025, 8:39 AMJames Fellows Yates
09/16/2025, 8:39 AMDaniel Lundin
09/16/2025, 8:39 AMwget?Daniel Lundin
09/16/2025, 8:40 AMJames Fellows Yates
09/16/2025, 8:41 AMDaniel Lundin
09/16/2025, 8:48 AM