I've installed the nf-core `wget` module in <#C01U...
# modules
d
I've installed the nf-core
wget
module in #C01U1E95JQ5. It uses a Wave container: community.wave.seqera.io/library/wget:1.21.4--8b0fcde81c17be5e. With Docker, name resolution fails. Perhaps not all the time, but most of the time. (We're using the same container in a module in #C02FC6VFQG1 and, AFAIK, this works but I haven't stress tested this.)
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$ docker run <http://community.wave.seqera.io/library/wget:1.21.4--8b0fcde81c17be5e|community.wave.seqera.io/library/wget:1.21.4--8b0fcde81c17be5e> wget <https://www.lnu.se>
--2025-09-16 08:09:35--  <https://www.lnu.se/>
Resolving <http://www.lnu.se|www.lnu.se> (<http://www.lnu.se|www.lnu.se>)... failed: Temporary failure in name resolution.
wget: unable to resolve host address '<http://www.lnu.se|www.lnu.se>'
I tried also with a Biocontainer, and get the same failure. Running the command directly, i.e. without Docker, works fine. Running the pipeline with
-profile conda
also works fine.
j
I would suggest trying
aria2
instead
It's much more robust
(also allows retries etc)
d
Instead of
wget
?
(I'm asking since the problem seems to be name resolution which, I assume, is not done by the program itself.)
j
Yes
d
It also fails, probably because of name resolution. I'll try the module in the pipeline later, to see if there's something with my Docker setup.