Shivangi
09/13/2025, 6:52 PMpharokka/pharokka is failing with conda ("_bioconda::pharokka=1.7.3_"): https://github.com/nf-core/modules/actions/runs/17699963696/job/50304997129?pr=9055. It works fine with docker.
I am wondering who would be the right person to reach out to discuss this further?
Attaching the traceback for quick look.
Thanks v much!
Traceback (most recent call last):
> File "/home/runner/_work/modules/modules/.nf-test/tests/f4ff6f3ff2c31cdd0ae0bfea1540e4f4/work/conda/env-59d3ccaaf552043f-38590c47211f7272b7570db0336b1682/bin/pharokka.py", line 489, in <module>
> main()
> File "/home/runner/_work/modules/modules/.nf-test/tests/f4ff6f3ff2c31cdd0ae0bfea1540e4f4/work/conda/env-59d3ccaaf552043f-38590c47211f7272b7570db0336b1682/bin/pharokka.py", line 128, in main
> ) = check_dependencies(args.skip_mash)
> File "/home/runner/_work/modules/modules/.nf-test/tests/f4ff6f3ff2c31cdd0ae0bfea1540e4f4/work/conda/env-59d3ccaaf552043f-38590c47211f7272b7570db0336b1682/bin/input_commands.py", line 379, in check_dependencies
> phanotate_major_version = int(phanotate_version.split(".")[0])
> ValueError: invalid literal for int() with base 10: '/home/runner/_work/modules/modules/'