Hi everybody, I am working on fixing stubs for gz ...
# modules
s
Hi everybody, I am working on fixing stubs for gz files, and have a PR in draft: https://github.com/nf-core/modules/pull/9055. Module
pharokka/pharokka
is failing with conda ("_bioconda::pharokka=1.7.3_"): https://github.com/nf-core/modules/actions/runs/17699963696/job/50304997129?pr=9055. It works fine with docker. I am wondering who would be the right person to reach out to discuss this further? Attaching the traceback for quick look. Thanks v much!
Copy code
Traceback (most recent call last):
    >     File "/home/runner/_work/modules/modules/.nf-test/tests/f4ff6f3ff2c31cdd0ae0bfea1540e4f4/work/conda/env-59d3ccaaf552043f-38590c47211f7272b7570db0336b1682/bin/pharokka.py", line 489, in <module>
    >       main()
    >     File "/home/runner/_work/modules/modules/.nf-test/tests/f4ff6f3ff2c31cdd0ae0bfea1540e4f4/work/conda/env-59d3ccaaf552043f-38590c47211f7272b7570db0336b1682/bin/pharokka.py", line 128, in main
    >       ) = check_dependencies(args.skip_mash)
    >     File "/home/runner/_work/modules/modules/.nf-test/tests/f4ff6f3ff2c31cdd0ae0bfea1540e4f4/work/conda/env-59d3ccaaf552043f-38590c47211f7272b7570db0336b1682/bin/input_commands.py", line 379, in check_dependencies
    >       phanotate_major_version = int(phanotate_version.split(".")[0])
    >   ValueError: invalid literal for int() with base 10: '/home/runner/_work/modules/modules/'