If people are done swooning over snpEff, Ensembl j...
# referencesm
Matthias De Smet
09/04/2025, 7:48 AMIf people are done swooning over snpEff, Ensembl just dropped v115 with support for structural variant annotation from gnomAD 😉
conda recipe and docker image are already available
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excited dog 2
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Maxime Garcia
09/04/2025, 7:55 AMnew cache, or still same old?
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Matthias De Smet
09/04/2025, 7:55 AMNew cache too!
Matthias De Smet
09/04/2025, 7:56 AMI’m busy updating the vep modules
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Maxime Garcia
09/04/2025, 7:57 AMok
Maxime Garcia
09/04/2025, 7:57 AMThanks
Maxime Garcia
09/04/2025, 7:58 AMyou can bump annotation cache to use 114
Maxime Garcia
09/04/2025, 7:58 AMI need the modules to be merged so that I can install 115 and then download the new cache
Maxime Garcia
09/04/2025, 7:58 AM(I mean, in the tests)
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Jon Lim
09/04/2025, 8:11 AMmaybe a stupid question but would the usual plugins like CADD/SpliceAI still work fine with the new version or have there been problems in general in the past with plugins and version transitions?
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Matthias De Smet
09/04/2025, 8:15 AMI don’t forsee much issues with plugins.
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Matthias De Smet
09/04/2025, 8:55 AM@Maxime Garcia, I’m getting aws errors when running the tests
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Could not determine namespace from anonymous request. Please use a namespace BaseURL or include an x-emc-namespace header (Service: Amazon S3; Status Code: 403; Error Code: AccessDenied; Request ID: ac10be04:194892c2368:ea0b1:2e4; S3 Extended Request ID: null; Proxy: null)👀 1
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Maxime Garcia
09/04/2025, 8:56 AMPR?
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Matthias De Smet
09/04/2025, 8:57 AMnone yet, running the tests locally first to save polar bears
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Maxime Garcia
09/04/2025, 8:57 AMso that's locally
Maxime Garcia
09/04/2025, 8:57 AMso I'd say issue with AWS credentials
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Matthias De Smet
09/04/2025, 8:58 AMdefault aws config has no creds
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Maxime Garcia
09/04/2025, 8:58 AMIs it using that one?
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Matthias De Smet
09/04/2025, 9:00 AMAh, found the issue. I had an old default in
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Matthias De Smet
09/04/2025, 9:18 AMm
Maxime Garcia
09/04/2025, 9:24 AMsingularity tests are failing
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Matthias De Smet
09/04/2025, 9:25 AMyeah, I was a bit too agressive in changing the version number
Matthias De Smet
09/04/2025, 9:25 AMfixing it now
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Maxime Garcia
09/04/2025, 9:33 AMMade one last comment
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Matthias De Smet
09/04/2025, 9:52 AMsingularity keeps failing, I guess the image isn’t synced yet
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Maxime Garcia
09/04/2025, 9:55 AMtime to switch to seqera containers?
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Matthias De Smet
09/04/2025, 9:55 AMhaha, yeah, I wouldn’t object actually
Matthias De Smet
09/04/2025, 9:57 AMWhat’s the current best practice for getting the correct URL for singularity images?
Matthias De Smet
09/04/2025, 10:02 AMnvm, it’s in the docs
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