Hihi, slightly offtopic of the references pipeline...
# referencesl
Luuk Harbers
08/28/2025, 8:27 AMHihi, slightly offtopic of the references pipeline but we were wondering if you potentially already have VEP annotation caches uploaded somewhere for CHM13 that can be pulled in a pipeline? We were wondering what the best way to host these things is
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Maxime Garcia
08/28/2025, 9:18 AMis it available in VEP?
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Luuk Harbers
08/28/2025, 9:20 AMYep its on the ensembl ftp. I wonder if the common way to go is just pull it straight from there or if you were planning to have all references/annotations in one aws bucket in the end?
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Maxime Garcia
08/28/2025, 9:21 AMok
Maxime Garcia
08/28/2025, 9:21 AMnice
Maxime Garcia
08/28/2025, 9:21 AMI can probably put it in #C05DACM4HPV for the time being
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Luuk Harbers
08/28/2025, 9:21 AMIf im not mistaken:
Copy code
<https://ftp.ensembl.org/pub/rapid-release/species/Homo_sapiens/GCA_009914755.4/ensembl>m
Maxime Garcia
08/28/2025, 9:21 AMand we'll figure it out when we fully switch to #C073ZDLNC92
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Luuk Harbers
08/28/2025, 9:21 AMLuuk Harbers
08/28/2025, 9:21 AMAlright
Luuk Harbers
08/28/2025, 9:22 AMWasnt aware of the #C05DACM4HPV 😄
So we'd just use that in our pipelines or what would you recommend (havent had a look yet but will do so now)
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Maxime Garcia
08/28/2025, 9:24 AMyeah, I use that in #CGFUX04HZ and #C01NHS4CC91
Maxime Garcia
08/28/2025, 9:24 AMworks quite well
Maxime Garcia
08/28/2025, 9:24 AMI did create this resource to be used for that exact use case to be honest
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Luuk Harbers
08/28/2025, 9:25 AMNoted, will have a look, thanks big time 😄
Also happy to help with any CHM13 stuff in references if we can.
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Maxime Garcia
08/28/2025, 9:25 AMNoted
Maxime Garcia
08/28/2025, 9:25 AMI will pester you, beware
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Luuk Harbers
08/28/2025, 9:26 AMHehe let's see who will do the pestering in the end
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Maxime Garcia
08/28/2025, 9:35 AM🤣
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