Serious enough for the new <https://nf-co.re/advis...
# random
m
Serious enough for the new https://nf-co.re/advisories feature?
j
Oof! I would say yes... What do you think @Matthias Zepper?
p
Depends if software updates are needed (likely yes?). If they can solve the hosting without this and it works again in a few days, an advisory might cause more confusion than it solves.
If not, and effectively any pipeline with any previous version of snpeff will never work again (without patches) then yeah, advisory territory imho
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j
The last ooint was my thinking...
m
actually it won't stop working
j
?
m
you just can't download new cache
but if you already have cache, it's fine
j
But if you don't?
m
or if you use #C05DACM4HPV for that, it's good
if you don't you're screwed indeed
m
I am leaning towards No regarding an advisory, because those are meant for things that affect nf-core components. If an external reference genome or SNP reference is unavailable, then this is of course an issue, but outside of our responsibility. The only reason for an advisory would be if that outdated path was hard coded in some pipeline releases. Config or default parameter would be a borderline case - easily changeable, but still potentially interesting to learn about. But as of now, no new location of the cache is known, so there is also no solution we could communicate?
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j
Fair point!
p
if you don't you're screwed indeed
That's the attitude! 😆
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m
Do we have levels in the advisories?
m
Yes. But don't try to unlock all of them with Sarek 😝
shakefist 1
m
My point is for Sarek never to be featured in advisories
m
Sorry to break it to you, but you already failed on that life goal: https://nf-co.re/advisories/process-shell-configuration For some pipelines, the maintainers on their own initiative diverted from the faulty pipeline template and were this unaffected.
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sarek on fire 1
m
meh, not a sarek issue per se, but a TEMPLATE one
p
old man yells at sarek
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m
meh, not a sarek issue per se, but a TEMPLATE one
Yes, blindly following orders will sometimes get you in a tough place. I am German, I have that on good authority. 😬
german internet 1
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m
@Phil Ewels thanks for the best emoji yet
I tried not to be too French and rebel against everything.
french revolution 2
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p
sarek wine
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m
ok, this one is the BEST ONE EVER
p
I thought you might like that 😆
m
one with croissants?
french revolution
Thanks @Matthias Zepper for french revolution
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m
Admittedly, the more timely version would have beenreflective vest instead of french revolution. I heard on September 10 this year, the next coup will be attempted...
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