Hi all :wave: Following advice from <@UE4L64T4G>,...
# random
s
Hi all 👋 Following advice from @Phil Ewels, I’ve added MultiQC custom content across my lightweight, teaching-friendly pipelines: • R1 Variant Splitter (R1 FASTQ → SNV/INDEL VCF split) – emits ``*_mqc.tsv``; MultiQC auto-renders a section with SNV/INDEL counts per sample + one-click HTML Repo: https://github.com/samson-olofinsae/r1_batch_variant_pipeline • R2 QC Troubleshooter (Trimmomatic) – CSV-backed custom table of pairing/trim stats; standalone builder + optional HTML Repo: https://github.com/samson-olofinsae/r2_qc_troubleshooter_pipeline • VCF QC (bcftools) – custom table with PASS rate, Ti/Tv, het/hom, med DP/QUAL, multi-allelic %, etc. (+ General Stats) Repo: https://github.com/samson-olofinsae/vcf_qc_pipeline Goal: make training runs reproducible, fault-tolerant, and at-a-glance via MultiQC. Feedback welcome - especially on custom-content IDs/naming to align with MultiQC “house style”. Happy to PR examples if useful. 🙌