Hello, I hope you are dowing well. I have a question concerning the alignement postprocessing with bowtie2. I am currently analyzing chipseq and rnaseq of bacteiral genome. do you have any idea about how can I see the percentage of uniquely mapped reads? and unmapped reads? shall I proceed only with uniquely mapped and elemniate multimapped and unmapped reads? Is is based on MAPQ score ? thank you