Hello everyone! I'm new to the pipeline. While I was testing the pipeline with multiple samples, it went smoothly, except that in the mapping genome step, only one sample was being processed. Here is the MultiQC report and the log. Any suggestions for this situation? Thank you very much!

Sorry, I'm not sure what exactly you are talking about, I see 8 samples in both the report and the log. For which process are you missing anything?

Hi Thomas, thank you for your reply. In my run, only the ExosomeNonFasting_D have the genome alignment result (ExosomeNonFasting_D_mature_hairpin_genome). I'm not sure what might be the cause. Other than that, the pipeline works fine. It just confuses me when I was checking the reads which are not miRNAs.

If you are talking about the Alignment Stats from samtools in the MultiQC report, those contain all the samples -- each one of the dots is a sample, and if you hover over them with the mouse pointer, it says the name, and if you move to other dots, the name changes.