Gianluca Moretti
07/22/2025, 1:48 PMjava.lang.NullPointerException: Cannot get property 'containerEngine' on null object it seems is related to containerEngine of the MULTIQC process. Anyone that can help me? I'm using apptainer and in the main.nf file of multiqc module I can see
process MULTIQC { label 'process_single'
conda "${moduleDir}/environment.yml"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'<https://depot.galaxyproject.org/singularity/multiqc:1.28--pyhdfd78af_0>' :
'biocontainers/multiqc:1.28--pyhdfd78af_0' }"
can the issue be here because instead of apptainer is finding 'singularity' as profile?Gianluca Moretti
07/23/2025, 6:29 AM