Hi, I have solved the previous issue, but now duri...
# methylong
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Hi, I have solved the previous issue, but now during execution of the pipeline in one of the last steps I get this
java.lang.NullPointerException: Cannot get property 'containerEngine' on null object
it seems is related to
containerEngine
of the MULTIQC process. Anyone that can help me? I'm using apptainer and in the main.nf file of multiqc module I can see
Copy code
process MULTIQC {                                                                       label 'process_single'

    conda "${moduleDir}/environment.yml"
    container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
        '<https://depot.galaxyproject.org/singularity/multiqc:1.28--pyhdfd78af_0>' :
        'biocontainers/multiqc:1.28--pyhdfd78af_0' }"
can the issue be here because instead of apptainer is finding 'singularity' as profile?
✅ 1
I saw that this is solved in the dev release. I have switched to this version and now it's working correctly!
✅ 1