Hi everyone, I am running the nf-core rnasplice pi...
# rnasplice
j
Hi everyone, I am running the nf-core rnasplice pipeline in particular for rMATS. In rMATS documentation, the default statistical model used is for unpaired replicates. They have a flag called --paired-stats that the user can pass in if they want to use their statistical model for paired replicates. I was looking through the parameter settings in the nf-core rnasplice pipeline, and it seems that --paired-stats is set as the default (image of the nextflow.config attached). Is there a reason why this is set as the default in rnasplice given that rMATS has the opposite?