Hello! I’ve been analysing some microRNAseq data with smrnaseq. The visualizations made by the pipeline are very handy but I’d like to do further analysis on my own. I would want to import the raw counts to edgeR or DESeq2. So far I found these CSV files in

results/mirna_quant/edger_qc /[mature/hairpin]_counts.csv

. I guess those are the raw counts, but I would be thankful if someone could confirm me that. Also, there is another interesting file in

results/mirna_quant/mirtop/mirna.tsv

, that I don’t fully understand jet what it is. Thanks!

These (

mirna_quant/edger_qc/...

) are the files I have been using so far, so I hope you are right. 😅 I don't think I have that

mirtop

file, probably because of my parameter choice.