:cry: I thought I had nf-cascade working with `-re...
# wg-meta-pipelines
m
😢 I thought I had nf-cascade working with
-resume
, but it appears I didn't. The process itself won't cache because
workflow.workDir
is part of the cache and that of course changes because subsequent processes write in that directory. Even fiddling around with the inputs to make the
cache_dir
a string doesn't help because the process itself won't serialise:
Copy code
com.esotericsoftware.kryo.KryoException: Class cannot be created (missing no-arg constructor): java.lang.ProcessImpl
	at com.esotericsoftware.kryo.Kryo$DefaultInstantiatorStrategy.newInstantiatorOf(Kryo.java:1228)
	at nextflow.util.InstantiationStrategy.newInstantiatorOf(SerializationHelper.groovy:247)
	at com.esotericsoftware.kryo.Kryo.newInstantiator(Kryo.java:1049)
	at com.esotericsoftware.kryo.Kryo.newInstance(Kryo.java:1058)
	at com.esotericsoftware.kryo.serializers.FieldSerializer.create(FieldSerializer.java:547)
	at com.esotericsoftware.kryo.serializers.FieldSerializer.read(FieldSerializer.java:523)
	at com.esotericsoftware.kryo.Kryo.readClassAndObject(Kryo.java:761)
	at com.esotericsoftware.kryo.serializers.MapSerializer.read(MapSerializer.java:143)
	at com.esotericsoftware.kryo.serializers.MapSerializer.read(MapSerializer.java:21)
	at com.esotericsoftware.kryo.Kryo.readClassAndObject(Kryo.java:761)
	at org.codehaus.groovy.vmplugin.v8.IndyInterface.fromCache(IndyInterface.java:321)
	at nextflow.util.KryoHelper.deserialize(SerializationHelper.groovy:181)
	at nextflow.util.KryoHelper.deserialize(SerializationHelper.groovy)
	at org.codehaus.groovy.vmplugin.v8.IndyInterface.fromCache(IndyInterface.java:321)
	at nextflow.processor.TaskContext.deserialize(TaskContext.groovy:208)
	at nextflow.cache.CacheDB.getTaskEntry(CacheDB.groovy:88)
	at nextflow.processor.TaskProcessor.checkCachedOrLaunchTask(TaskProcessor.groovy:807)
I don't have records of my tests so I don't know what I did back then, that made me think it worked correctly.