Hi @Júlia Mir @Laurence Kuhlburger, brief recap on where we stand for the upcoming release: • PR #237 (custom trimming options) is ready for review, could you please take a look and let me know if this can be merged? • PR #239 (test conversion to nf-test), I started this during the hackathon, but some tests are lengthy and I had also other things to do, so the assertion statements are still to do, I will try to complete this as soon as possible, and then if you agree I will change the CI gh workflow to use nf-test instead of the test profiles • PR #235 (the issue with the conda env), I have read your discussion on the PR... is there really something to fix here? • issue #240 (additinal test for bowtie alignment), if I am not mistaken, this is not covered currently in tests, so I will do this when I finish PR #239 • other issues?

Hi Matteo, there is also a larger older pr from myself which just needs a few small changes (I am on my phone so don't have the pr #). I will hopefully have it ready within the next week. Then maybe we can include it. Thoughts everyone?

Hello! I am starting to review your PRs, sorry for taking a bit longer 😄

It should be runnable. What I really want to do is get the gpt results into the MultiQC report. That would be great. In case you need a api key for testing let me know i can provide you with a temporary key :)

@Leon Hornich great! sorry for not including your PR in the list, but I noticed only yesterday that there was some recent activity in #193 Anyway, there is no hurry, there's plenty I need to do still for #239 and #240 before we can do the release

all good, we are all recovering form the hackathon 😂 let me know if you need anything else 🙂