channels:
- conda-forge
- bioconda
dependencies:
- pip
- pip:
  - PyYAML==6.0.2
  - metaspace2020==2.0.9

I get the following error when linting as it's try to sort it and dict are not supported in sorting

86 if sorted(env_yml["dependencies"]) == env_yml["dependencies"]:

TypeError: '<' not supported between instances of 'dict' and 'str'

using this pip format is not supported for now, we already have an open issue and will work on it

- pip:
  - PyYAML==6.0.2
  - metaspace2020==2.0.9

Sorry another question. I keep getting this error when testing conda while other profilers seems to work fine. https://github.com/nf-core/modules/actions/runs/14082184729/job/39437563125?pr=8087 Any idea why the import module is failing. I don't know how the conda environment is built from the container

do you have an environment.yml file in your module?

I tried with the provided environment.yml and I still got the same error, so I removed it, built a new container with seqera thinking that I can get away with it. But seems that containers are independent from the conda environment

yees, you always need an environment.yml 😄 even if you use seqera containers