Hi to everyone, I have just submitted a pull request for a variant prioritization project for the hackathon. The aim will be to integrate the Personal Cancer Genome reporter as a nf-core pipeline. Some work has been already done in the past, so we have a solid bases from which to start. I'm available for any further questions 😄 PCGR: https://sigven.github.io/pcgr/index.html nf-pcgr: https://github.com/BarryDigby/nf-pcgr/tree/master Pull-request: https://github.com/nf-core/website/pull/3207

hey! Cool Idea I have another project I have to do during the hackathon unfortunately. Did you check in #CE6SDEDAA whether this project will be accepted?

Hi @Mark Polster, sorry I deleted my previous answer because I made some mistake. The pipeline was already accepted in 2023, but it was never finished. This is a reference to follow the full discussion https://nfcore.slack.com/archives/CE6SDEDAA/p1674573191030419

Hi youssef, I think the idea back then was to add it as part of the sarek or oncoanalyzer pipeline rather than it being an own pipeline, is this what you are referring to?

I submitted a new proposal at #CE6SDEDAA has @James Fellows Yates proposed 🙂