Hi everybody, I'm hoping to use ChIPseq pipeline to analyze our data but I've struck a wall at internal script

gtf2bed

which does not correctly convert my gtf (version 2.2*) to bed format (all CDS genes are gone). When I spoon-feed cleaned up gtf with only genes** in it, than the converted

bed

is empty and the pipeline fails at one of the consecutive steps. How the gtf should look like***? (I would use gff, but the fixed version of the pipeline is not released). *Generated by ncbi annotwriter **feature type

gene

***preferably example data