Hello, how can I run multiple design matrices for MLE within on nextflow run of the pipeline? The usage documentation was ambiguous. Thanks!

Hi Patrick, you can just give several design matrices

--mle_design_matrix *_design_matrices.txt

for instance

Hi Laurence, thanks! I’ve tried to use wildcard character but the pipeline just processed the first matching design matrix file.

can you try putting your design matrice in a folder and then

folder_name/*

by any chance?

Yes I can try that and will let you know. Thank you very much!

ok otherwise i’ll have a closer look 🙂

Hi Laurence, I did the following, still the pipeline just took the first design matrix txt file and ran with it. --mle true \ --mle_control_sgrna 92_sgrna_controls.txt \ --mle_design_matrix 32_designmat/* \

hi thanks for the command and the update, i’ll hopefully have time to have a look