Does anyone know why the image for fasterqdump process is using such an old version of sra-tools?
"fasterq-dump" version 2.11.0
I did try to build and update the image and I now suspect that more recent versions of sra-tools might have issues with /tmp/ directory usage but I would love to hear from someone else with this knowledge
m
Maxime Garcia
12/18/2024, 8:46 AM
There was an issue with a more recent version that wasn't fixed at the time we tried to update it, so we held it back
Maxime Garcia
12/18/2024, 8:46 AM
We'll look again into it
a
Alice Walsh
12/18/2024, 11:59 AM
thanks @Maxime Garcia! I have some other feedback on the current fetchngs pipeline that I might integrate into a PR if welcome in the new year.