A community effort to collect a curated set of analysis pipelines built using Nextflow.

nf-core

Hi everyone. I noticed that the task `CHANGEO_PARSEDB_SELECT` is never used. Is this OK? Also, <https://github.com/nf-core/airrflow/blob/0c0bcde09516df6dd5532e7eb88906673d00370b/modules/local/parse_logs.nf#L21|this line> says it's collecting the logs from this task, but it's actually receiving the logs from `CHANGEO_MAKEDB`. Thanks and cheers!

Hi <@USV2ACGN8> I'll have a look, it's probably a remnant that was used in one of the previous versions of the pipeline

yes, those logs correspond correctly to changeo_makedb logs, I'll update the comment

Thanks, Gisela. Was there a specific reason to switch from `ParseDB select` to `ParseDB split`?

Just out of curiosity. I'm not against or in favor of any of them.

hmm I think that was a remnant from some time ago where there was an additional step after splitting that selected specifically sequences from particular loci, we removed it as we wanted to be generic as to which sequences were aligned with IgBlast