Hello everyone! I have a question regarding the input for the Airrflow pipeline. If I understand correctly from the documentation, for bulk data, the pipeline is currently set up to process data from short-read sequencing technologies, where you expect and get the mate pairs sorted in corresponding R1/R2 files. The names of these files are then listed as input in the input_samplesheet.tsv, and both files are expected and required inputs, right? Given these requirements, would it currently be possible to run the pipeline with data provided by long-read sequencing technologies, such as Nanopore data? In this case, the pairs are not split into multiple files. Thanks in advance!

Hi @Jonas Schuck, yes indeed at the moment we only support short-read sequencing technologies, we hope to expand to long-read soon though, but this could take some time to implement