Good morning, sorry for the basic question, but I'...
# chipseq
m
Good morning, sorry for the basic question, but I'm looking and I can't find the answer. What are the default parameters that the pipeline uses when calling peaks with MACS2
--macs_fdr
? The documentation suggests it should be a number but doesn't mention what's default? is it
0.05
as it's described in https://pypi.org/project/MACS2/ ? Thank you.
j
Hi, if it is not set by the user using the
--macs_fdr
parameter then it is not set in anyway by default