I was just made aware of this tool from Stanford <...
# pipeline-resource-optimization
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I was just made aware of this tool from Stanford https://github.com/StanfordBioinformatics/Hummingbird
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The unique feature about Hummingbird is that it takes the input files, downsamples them, runs the whole computational pipeline on these downwsampled files and subsequently provides the user with different optimum instance configurations. Therefore, the users obtain the resulting configurations in a short amount of time compared to a run on the entire pipeline with the whole input file(s) for different instance configurations.
and here is the the paper FYI @Riley Grindle
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Dang, cloud only.
But should be able to something with the methodology described.
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