Hi all, Nice to see interest again! I've just upda...
# pipeline-resource-optimization
d
Hi all, Nice to see interest again! I've just updated some intro slides to SummaryStats, especially where it needs to go... exporting a model for the plugin. https://docs.google.com/presentation/d/1JVyVMyv0ubDrjORRtsfatuDw5oSbCK57zs5Q-kmhAwY/edit?usp=sharing Please take a look and leave comments where you want to. I'd like to get this finished and usable and it is fairly close to covering initial goals. We havn't been able to get a GSoC mentee this year for it, there is another mentee ship starting via sanger though so we might still get someone. However, if someone here wants to take a gander, then please do! I still haven't had time to work on it as I have had other projects to work on, namely BGA24: thebgacademy.org (shameless plugin I am aware)
r
I notice you mentioned the construction of a database. Would this be the product that gets queried by the plugin? Also have you considered a way for the community to potentially contribute to this data collection/refinement?
d
In my opinion no, to a central DB that is. This sort of thing could grow incredibly fast and could turn off Human Genetics users which have to be very tight about the data they release. Personally I think it should focus more on supporting a local DB (institute specific, pipeline specific might be too fractional) and/or a summarised table of weights (which we would be in a position to provide. A file which summarises requirements for X tool with input between Y and Z values, although having a system to update the plugins main store of data with submitted data is a very good idea). This would require an agreement on values we should all be collecting
r
I couldn't agree more. Do you have locally developed tools that parse the execution logs for this data?
d
Hi Riley, Sorry for the late reply. At the minute everything is in that one repo. There is a Class for the execution log without TreeVal data, with TreeVal data and condensing it down. Feel try to try and get it running on your end and ping me with issues.
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I'm pretty sure i've documented it's requirements enough for that
r
@Damon-Lee Pointon No worries at all! Will update with my progress. Thanks.