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Waves of PRs to modules for citations: - deepvaria...
# sarek_dev
m
Maxime Garcia
11/13/2026, 4:55 PM
Waves of PRs to modules for citations: • deepvariant:
https://github.com/nf-core/modules/pull/13730
• dragmap:
https://github.com/nf-core/modules/pull/13731
(I used the DRAGEN paper here, not sure, please ~argue~comment • freebayes:
https://github.com/nf-core/modules/pull/13732
• goleft:
https://github.com/nf-core/modules/pull/13735
(yes I am confused to, but in the abstract: Indexcov is available at
https://github.com/brentp/goleft
) • lofreq:
https://github.com/nf-core/modules/pull/13736
• manta:
https://github.com/nf-core/modules/pull/13737
• muse:
https://github.com/nf-core/modules/pull/13739
• ngscheckmate:
https://github.com/nf-core/modules/pull/13740
• sentieon:
https://github.com/nf-core/modules/pull/13742
+
https://github.com/nf-core/modules/pull/13762
• snpsift:
https://github.com/nf-core/modules/pull/13743
• strelka:
https://github.com/nf-core/modules/pull/13746
• tiddit:
https://github.com/nf-core/modules/pull/13748
• valorciraptor:
https://github.com/nf-core/modules/pull/13750
• vcflib:
https://github.com/nf-core/modules/pull/13751
• vcftools:
https://github.com/nf-core/modules/pull/13752
• more vep:
https://github.com/nf-core/modules/pull/13761
(Yeah I know, not in sarek this one, but we use vep) • htslib:
https://github.com/nf-core/modules/pull/13764
• more samtools:
https://github.com/nf-core/modules/pull/13766
✅ 1
r
Rike Hanssen
11/13/2026, 4:59 PM
shared a GIF
Rike Hanssen
11/13/2026, 5:00 PM
can we jsut give you temp god powers. I don’t want to approve this.
m
Maxime Garcia
11/13/2026, 5:01 PM
Ask your agent to have a look
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