A community effort to collect a curated set of analysis pipelines built using Nextflow.

nf-core

:x: *sarek/test_full_aws* failed :crying_cat_face: *Run Name*
sarek_test_full_aws *Duration*
4h 33m 57s *Status*
:x: Failed *Error Message*
```5:03PM INF [seqera-fusion] OpenTelemetry collector initialized component=metrics format=json
5:03PM INF [seqera-fusion] setting up AWS Batch spot instance monitoring provider=aws-batch
5:03PM INF [seqera-fusion] instance metadata ami-id=ami-0acc5dd6b31082def instance-id=i-06e2cac54e02f5024 instance-type=r6id.4xlarge
5:03PM INF [seqera-fusion] starting incremental snapshot timer interval=300000
gzip: stdout: Broken pipe
2026-11-09 17:03:02 - INFO: Disabling --hgvs; using --offline and no FASTA file found
5:08PM INF [seqera-fusion] sending incremental snapshot signal (SIGUSR1)
5:08PM ERR [seqera-fusion] Failed to fetch entry size. This may indicate storage access issues. Check `error` field for details and report this issue if it persists. error="operation error S3: HeadObject, https response error StatusCode: 0, RequestID: , HostID: , canceled, context canceled" goid=343 operation=Readlink path=/s3/annotation-cache/vep_cache/116_GRCh38/homo_sapiens/116_GRCh38/20/41000001-42000000_reg.gz
-------------------- EXCEPTION --------------------
MSG: ERROR: 
STACK Bio::EnsEMBL::VEP::AnnotationSource::Cache::BaseSerialized::deserialize_from_file_storable /opt/wave/.pixi/envs/default/share/ensembl-vep-116.3-0/modules/Bio/EnsEMBL/VEP/AnnotationSource/Cache/BaseSerialized.pm:134
STACK Bio::EnsEMBL::VEP::AnnotationSource::Cache::BaseSerialized::deserialize_from_file /opt/wave/.pixi/envs/default/share/ensembl-vep-116.3-0/modules/Bio/EnsEMBL/VEP/AnnotationSource/Cache/BaseSerialized.pm:103
STACK Bio::EnsEMBL::VEP::AnnotationSource::Cache::BaseSerialized::get_features_by_regions_uncached /opt/wave/.pixi/envs/default/share/ensembl-vep-116.3-0/modules/Bio/EnsEMBL/VEP/AnnotationSource/Cache/BaseSerialized.pm:261
STACK Bio::EnsEMBL::VEP::AnnotationSource::get_all_features_by_InputBuffer /opt/wave/.pixi/envs/default/share/ensembl-vep-116.3-0/modules/Bio/EnsEMBL/VEP/AnnotationSource.pm:134
STACK Bio::EnsEMBL::VEP::AnnotationType::RegFeat::annotate_InputBuffer /opt/wave/.pixi/envs/default/...``` *Command Line*
```nextflow run '<https://github.com/nf-core/sarek>' -name sarek_test_full_aws -params-file '<https://api.cloud.seqera.io/ephemeral/sMCkdzDFIWRMm7ctYetSTg.json>' -with-tower -r dev -profile test_full_aws``` Nov 9, 2026 at 5:08 PM