:x: sarek/test_full_germline_aws failed :crying_ca...
# sarek_devf
Full test notifications
11/09/2026, 4:58 PM❌ sarek/test_full_germline_aws failed 😿 Run Name
sarek_test_full_germline_aws Duration
4h 23m 16s Status
❌ Failed Error Message
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(more omitted..)
4:56PM INF [seqera-fusion] instance metadata ami-id=ami-0acc5dd6b31082def instance-id=i-05174fa982440097e instance-type=m6id.16xlarge
4:56PM INF [seqera-fusion] starting incremental snapshot timer interval=300000
2026-11-09 16:56:58.585393: I tensorflow/core/util/port.cc:113] oneDNN custom operations are on. You may see slightly different numerical results due to floating-point round-off errors from different computation orders. To turn them off, set the environment variable `TF_ENABLE_ONEDNN_OPTS=0`.
2026-11-09 16:56:58.585705: I external/local_tsl/tsl/cuda/cudart_stub.cc:32] Could not find cuda drivers on your machine, GPU will not be used.
2026-11-09 16:56:58.588270: I external/local_tsl/tsl/cuda/cudart_stub.cc:32] Could not find cuda drivers on your machine, GPU will not be used.
2026-11-09 16:56:58.627091: I tensorflow/core/platform/cpu_feature_guard.cc:210] This TensorFlow binary is optimized to use available CPU instructions in performance-critical operations.
To enable the following instructions: AVX2 AVX512F AVX512_VNNI FMA, in other operations, rebuild TensorFlow with the appropriate compiler flags.
/usr/local/lib/python3.10/dist-packages/google/api_core/_python_version_support.py:246: FutureWarning: You are using a non-supported Python version (3.10.12). Google will not post any further updates to google.api_core supporting this Python version. Please upgrade to the latest Python version, or at least Python 3.11, and then update google.api_core.
warnings.warn(message, FutureWarning)
2026-11-09 16:56:59.499870: W tensorflow/compiler/tf2tensorrt/utils/py_utils.cc:38] TF-TRT Warning: Could not find TensorRT
I1109 16:57:00.516004 140452766544320 run_deepvariant.py:623] Creating a directory for intermediate results in tmp
***** Intermediate results will be written to tmp in docker. ****
I1109 16:57:00.516770 140452766544320 run_deepvariant.py:894] env = {'R_PROFILE_USER': '/.Rprofile', 'FUSION_LICENSE_TOKEN': 'eyJ4NWMiOlsiTUlJQ2RqQ0NBZGlnQXd... Copy code
nextflow run '<https://github.com/nf-core/sarek>' -name sarek_test_full_germline_aws -params-file '<https://api.cloud.seqera.io/ephemeral/BFNZznNKLgjEy0QinEJv5A.json>' -with-tower -r dev -profile test_full_germline_aws