A community effort to collect a curated set of analysis pipelines built using Nextflow.

nf-core

:x: *sarek/test_full_germline_ncbench_agilent* failed :crying_cat_face: *Run Name*
sarek_test_full_germline_ncbench_agilent *Duration*
1h 16m 47s *Status*
:x: Failed *Error Message*
```2026-11-09 13:50:08.646714: I tensorflow/core/util/port.cc:113] oneDNN custom operations are on. You may see slightly different numerical results due to floating-point round-off errors from different computation orders. To turn them off, set the environment variable `TF_ENABLE_ONEDNN_OPTS=0`.
2026-11-09 13:50:08.647045: I external/local_tsl/tsl/cuda/cudart_stub.cc:32] Could not find cuda drivers on your machine, GPU will not be used.
2026-11-09 13:50:08.649939: I external/local_tsl/tsl/cuda/cudart_stub.cc:32] Could not find cuda drivers on your machine, GPU will not be used.
2026-11-09 13:50:08.685941: I tensorflow/core/platform/cpu_feature_guard.cc:210] This TensorFlow binary is optimized to use available CPU instructions in performance-critical operations.
To enable the following instructions: AVX2 AVX512F AVX512_VNNI FMA, in other operations, rebuild TensorFlow with the appropriate compiler flags.
/usr/local/lib/python3.10/dist-packages/google/api_core/_python_version_support.py:246: FutureWarning: You are using a non-supported Python version (3.10.12). Google will not post any further updates to google.api_core supporting this Python version. Please upgrade to the latest Python version, or at least Python 3.11, and then update google.api_core.
  warnings.warn(message, FutureWarning)
2026-11-09 13:50:09.521876: W tensorflow/compiler/tf2tensorrt/utils/py_utils.cc:38] TF-TRT Warning: Could not find TensorRT
I1109 13:50:10.485569 139856566079936 run_deepvariant.py:623] Creating a directory for intermediate results in tmp
I1109 13:50:10.486282 139856566079936 run_deepvariant.py:894] env = {'R_PROFILE_USER': '/.Rprofile', 'FUSION_LICENSE_TOKEN': 'eyJ4NWMiOlsiTUlJQ2RqQ0NBZGlnQXdJQkFnSUdBYUdzY2lTOE1Bb0dDQ3FHU000OUJBTUNNSE14Q3pBSkJnTlZCQVlUQWtWVE1SSXdFQVlEVlFRSURBbENZWEpqWld4dmJtRXhFakFRQmdOVkJBY01DVUpoY21ObGJHOXVZVEVVTUJJR0ExVUVDZ3dMVTJWeFpYSmhJRWx1WXk0eEVqQVFCZ05WQkFzTUNWTmxjV1Z5WVNCRFFURVNNQkFHQTFVRUF3d0pVMlZ4WlhKaElFTkJNQjRYRFRJMk1URXdOVEUxTURJd05Gb1hEVEkyTVRFeE16RTF...``` *Command Line*
```nextflow run '<https://github.com/nf-core/sarek>' -name sarek_test_full_germline_ncbench_agilent -params-file '<https://api.cloud.seqera.io/ephemeral/nZzEiopvMq-dIMi3R08maw.json>' -with-tower -r dev -profile test_full_germline_ncbench_agilent``` Nov 9, 2026 at 1:51 PM