A community effort to collect a curated set of analysis pipelines built using Nextflow.

nf-core

:x: *sarek/test_full_aws* failed :crying_cat_face: *Run Name*
sarek_test_full_aws *Duration*
2h 30m 35s *Status*
:x: Failed *Error Message*
```(more omitted..)
I1106 13:11:51.967808 139648898191808 make_examples_core.py:384] Task 12/24: Common contigs are ['chr1', 'chr2', 'chr3', 'chr4', 'chr5', 'chr6', 'chr7', 'chr8', 'chr9', 'chr10', 'chr11', 'chr12', 'chr13', 'chr14', 'chr15', 'chr16', 'chr17', 'chr18', 'chr19', 'chr20', 'chr21', 'chr22', 'chrX', 'chrY', 'chrM']
I1106 13:11:51.964631 140584663433664 make_examples_core.py:384] Task 8/24: Common contigs are ['chr1', 'chr2', 'chr3', 'chr4', 'chr5', 'chr6', 'chr7', 'chr8', 'chr9', 'chr10', 'chr11', 'chr12', 'chr13', 'chr14', 'chr15', 'chr16', 'chr17', 'chr18', 'chr19', 'chr20', 'chr21', 'chr22', 'chrX', 'chrY', 'chrM']
I1106 13:11:51.968627 140345864806848 make_examples_core.py:384] Task 11/24: Common contigs are ['chr1', 'chr2', 'chr3', 'chr4', 'chr5', 'chr6', 'chr7', 'chr8', 'chr9', 'chr10', 'chr11', 'chr12', 'chr13', 'chr14', 'chr15', 'chr16', 'chr17', 'chr18', 'chr19', 'chr20', 'chr21', 'chr22', 'chrX', 'chrY', 'chrM']
I1106 13:11:51.970854 140084532060608 make_examples_core.py:384] Task 3/24: Common contigs are ['chr1', 'chr2', 'chr3', 'chr4', 'chr5', 'chr6', 'chr7', 'chr8', 'chr9', 'chr10', 'chr11', 'chr12', 'chr13', 'chr14', 'chr15', 'chr16', 'chr17', 'chr18', 'chr19', 'chr20', 'chr21', 'chr22', 'chrX', 'chrY', 'chrM']
I1106 13:11:52.003313 139631162520000 make_examples_core.py:384] Task 0/24: Common contigs are ['chr1', 'chr2', 'chr3', 'chr4', 'chr5', 'chr6', 'chr7', 'chr8', 'chr9', 'chr10', 'chr11', 'chr12', 'chr13', 'chr14', 'chr15', 'chr16', 'chr17', 'chr18', 'chr19', 'chr20', 'chr21', 'chr22', 'chrX', 'chrY', 'chrM']
I1106 13:11:52.172692 140202118545856 make_examples_core.py:384] Task 23/24: Common contigs are ['chr1', 'chr2', 'chr3', 'chr4', 'chr5', 'chr6', 'chr7', 'chr8', 'chr9', 'chr10', 'chr11', 'chr12', 'chr13', 'chr14', 'chr15', 'chr16', 'chr17', 'chr18', 'chr19', 'chr20', 'chr21', 'chr22', 'chrX', 'chrY', 'chrM']
I1106 13:11:52.500329 139648898191808 genomics_reader.py:223] Reading chr17_38877931-38878296.bed with NativeBedReader
I1106 1...``` *Command Line*
```nextflow run '<https://github.com/nf-core/sarek>' -name sarek_test_full_aws -params-file '<https://api.cloud.seqera.io/ephemeral/bQeba6l1DKwgtdwCA2unSQ.json>' -with-tower -r dev -profile test_full_aws``` Nov 6, 2026 at 1:13 PM