Jean Mainguy
11/06/2026, 11:23 AM--refine_bins_dastool with --refine_bins_tool dastool|binette. It’s cleaner, especially if another refiner gets added later (MAGScoT was suggested in https://github.com/nf-core/mag/issues/1131). It’s a breaking change though, --refine_bins_dastool needs to be deprecated.
• Option B: add a --refine_bins_binette mutually exclusive with --refine_bins_dastool. Nothing breaks.
Do you have any preference ?
We could also chain them (DAS Tool then Binette, or the other way round), but that feels a bit sketchy and adds extra complexity.