So the linting still gives me a lot of errors and among others wants to have additional files with github actions:
files_exist: File not found: .github/actions/get-shards/action.yml │
│ files_exist: File not found: .github/actions/nf-test/action.yml │
│ files_exist: File not found: .github/workflows/pr-comment.yml │
│ files_exist: File not found: docs/CONTRIBUTING.md │
│ files_exist: File not found: tests/default.nf.test
I just wanted to confirm, that this is not what you already fixed @Hannah Jones and I am just still not on the right version?
s
Svetlana L
11/03/2026, 2:23 PM
I just understood that nextflow lint checks syntax and nf-core pipelines lint checks that pipeline corresponds to nf-core conventions. 2 nonoverlapping lints 😅
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Melina Klostermann
11/03/2026, 2:59 PM
Ah ok, but then it is good we do both 😌
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Hannah Jones
11/03/2026, 3:00 PM
Yeah I think without nextflow lint, the pipeline won't run, and I think without nf-core pipelines lint, the pipeline won't be accepted 🙂