nf core scroll nf-core/createpanelrefs 1.1.0 (Abisko 🇸🇪 ❄️) is out! https://github.com/nf-core/createpanelrefs/releases/tag/1.1.0 What's new: • CNVkit:

--cnvkit_method

(

hybrid

,

amplicon

or

wgs

, default

wgs

) for exome, panel and amplicon panels of normals, and

--cnvkit_annotate

to label target regions with gene names (both need

--cnvkit_targets

for targeted methods) • GENS:

--gens_mosdepth_fast_mode

to turn mosdepth

--fast-mode

on or off for long-read (

lrs

) panels of normals • Tools used are now AUTOMATICALLY cited in the MultiQC methods description, built from the modules' metadata • Updated tools: CNVkit 0.9.14, GATK4 4.7.0.0, samtools 1.24 • nf-core template 4.2.1, nf-core-utils 0.7.0, plus a metro map of the pipeline in the README Thanks to @Matthias De Smet, @mashehu, @Nicolas Vannieuwkerke, @Evangelos Karatzas, @Daniel Lundin, @Famke Bäuerle and @Rike Hanssen for all comments, discussions and reviews 🙏