Kübra Narcı
10/30/2026, 8:45 AM--method aardvark)
• Interactive HTML plots instead of static PNGs
• New hap.py stratified HTML report
• --skip_reports to turn off the datavzrd/happy reports
• Concordance can be limited to specific truth/query pairs
• Lower memory use in VCF_TO_CSV and the upset plots (fewer OOMs on big VCFs)
⚠️ Before upgrading: pre.py preprocessing is deprecated, the small-variant splitting subworkflow is gone, and plot outputs are now .html, so check your params and downstream scripts.
Thanks to everyone who contributed! 🎉
Release notes: https://github.com/nf-core/variantbenchmarking/releases/tag/1.6.0