Hello <!channel> :rocket: great news! nf-core/var...
# variantbenchmarking
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Hello <!channel> 🚀 great news! nf-core/variantbenchmarking 1.6.0 Nominal Eco is out! What's new • Aardvark benchmarking for small variants (
--method aardvark
) • Interactive HTML plots instead of static PNGs • New hap.py stratified HTML report •
--skip_reports
to turn off the datavzrd/happy reports • Concordance can be limited to specific truth/query pairs • Lower memory use in
VCF_TO_CSV
and the upset plots (fewer OOMs on big VCFs) ⚠️ Before upgrading: pre.py preprocessing is deprecated, the small-variant splitting subworkflow is gone, and plot outputs are now
.html
, so check your params and downstream scripts. Thanks to everyone who contributed! 🎉 Release notes: https://github.com/nf-core/variantbenchmarking/releases/tag/1.6.0
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nf core pet 1
nextflow bounce 2
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