:x: sarek/test_full_aws failed :crying_cat_face: R...
# sarek_devf
Full test notifications
10/28/2026, 12:20 PM❌ sarek/test_full_aws failed 😿 Run Name
prickly_bhabha Duration
1h 59m 9s Status
❌ Failed Error Message
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(more omitted..)
vsc_min_fraction_snps: 0.029
vsc_max_fraction_indels_for_non_target_sample: 0.5
vsc_max_fraction_snps_for_non_target_sample: 0.5
I1028 12:19:40.672078 139843322835392 genomics_reader.py:223] Reading HCC1395N.recal.cram with NativeSamReader
I1028 12:19:40.674623 139913965515200 genomics_reader.py:223] Reading HCC1395N.recal.cram with NativeSamReader
I1028 12:19:40.688617 139843322835392 genomics_reader.py:223] Reading HCC1395T.recal.cram with NativeSamReader
I1028 12:19:40.692461 139843322835392 dv_utils.py:333] From /opt/models/deepsomatic/wes/model.example_info.json: Shape of input examples: [200, 221, 7], Channels of input examples: [1, 2, 3, 4, 5, 6, 19].
I1028 12:19:40.692775 139843322835392 make_examples_options.py:1233] Parsing AUX Fields: []
W1028 12:19:40.693220 139843322835392 make_examples_options.py:1284] Automatically setting --trim_reads_for_pileup to True because --alt_aligned_pileup is set.
I1028 12:19:40.692029 139913965515200 genomics_reader.py:223] Reading HCC1395T.recal.cram with NativeSamReader
I1028 12:19:40.696034 139843322835392 make_examples_core.py:384] Task 0/12: Preparing inputs
I1028 12:19:40.695456 139913965515200 dv_utils.py:333] From /opt/models/deepsomatic/wes/model.example_info.json: Shape of input examples: [200, 221, 7], Channels of input examples: [1, 2, 3, 4, 5, 6, 19].
I1028 12:19:40.695792 139913965515200 make_examples_options.py:1233] Parsing AUX Fields: []
W1028 12:19:40.696234 139913965515200 make_examples_options.py:1284] Automatically setting --trim_reads_for_pileup to True because --alt_aligned_pileup is set.
I1028 12:19:40.698986 139913965515200 make_examples_core.py:384] Task 6/12: Preparing inputs
I1028 12:19:40.724722 139843322835392 genomics_reader.py:223] Reading HCC1395T.recal.cram with NativeSamReader
I1028 12:19:40.727236 139913965515200 genomics_reader.py:223] Reading HCC1395T.recal.cram with NativeSamReader
I1028 12:19:41.011229 139741974778304 make_examples_core.py:384] Task 10/12: Common cont... Copy code
nextflow run '<https://github.com/nf-core/sarek>' -name prickly_bhabha -params-file '<https://api.cloud.seqera.io/ephemeral/6-k0WATKAoolPmXD_0NuBg.json>' -with-tower -r 6e9b164daa2a54c98f7dda538645d340c561ac24 -profile test_full_aws