A community effort to collect a curated set of analysis pipelines built using Nextflow.

nf-core

:x: *variantbenchmarking/test_full* failed :crying_cat_face: *Run Name*
tender_dubinsky *Duration*
10m 24s *Status*
:x: Failed *Error Message*
```9:00AM INF [seqera-fusion] OpenTelemetry collector initialized component=metrics format=json
9:00AM INF [seqera-fusion] setting up AWS Batch spot instance monitoring provider=aws-batch
9:00AM INF [seqera-fusion] instance metadata ami-id=ami-0acc5dd6b31082def instance-id=i-0cd984ca1382a946a instance-type=m6id.4xlarge
9:00AM INF [seqera-fusion] starting incremental snapshot timer interval=300000
Error: Failed to read dataset from path /nf-core-awsmegatests/work/variantbenchmarking/work-f3a2cda41276677fe6c5ff6295f08eb7850252c5/d3/18b19bf41372a6dbc900c0de7b514a/sompy.summary.csv
Caused by:
    0: IO error: No such file or directory (os error 2)
    1: No such file or directory (os error 2)
FUSION_GPU_USED=false
Fusion Info:
    available_disk: start:943GB, min:943GB, max:943GB, end:943GB
    clone_namespace: false
    download: 0.00MB, drops:0, skip:0, sync:0, req:2
    fusion_version: 2.5.15-4669a97
    kernel_version: 6.1
    max_open_files: 1048576
    upload: 0.00MB, drops:0, skip:0, sync:7, req:7``` *Command Line*
```nextflow run '<https://github.com/nf-core/variantbenchmarking>' -name tender_dubinsky -params-file '<https://api.cloud.seqera.io/ephemeral/v_PrjdP2sCg5E1LQ-68NcQ.json>' -with-tower -r f3a2cda41276677fe6c5ff6295f08eb7850252c5 -profile test_full_somatic``` Oct 28, 2026 at 9:00 AM