IRFinder-S: that's tricky without conda because we...
# rnasplice
p
IRFinder-S: that's tricky without conda because we need to cover also that in all pipelines. So one option is to create one and maintain it. Would you like to do that?
f
Do you mean creating a Conda package? I haven't done that before, but I could do that if it's the best approach.
p
That would be great! I don't see any problem. My only worry is the memory requirement, but we can check that later.
s
I'd suggest asking the developers if they can relax the memory requirement from a hard fail.
👍 1
could potentially be done through the bioconda setup, but that is probably not standard
f
Yes, it would be easiest if they could address this on their end. The original IRFinder had an official Bioconda package, but unfortunately, IRFinder-S doesn't. The repository also hasn't been updated in about four years. I think I'll still reach out to the developers and ask about it.
s
yeah, still ask
p
One aspect to keep in mind. They use CNN so this is gonna likely require GPU, though I didn't see runtime benchmarks - I just quick checked the paper.