:x: sarek/test_full_aws failed :crying_cat_face: R...
# sarek_devf
Full test notifications
10/26/2026, 7:31 PM❌ sarek/test_full_aws failed 😿 Run Name
sarek_test_full_aws Duration
2h 14m 59s Status
❌ Failed Error Message
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/usr/local/lib/python3.10/dist-packages/google/api_core/_python_version_support.py:246: FutureWarning: You are using a non-supported Python version (3.10.12). Google will not post any further updates to google.api_core supporting this Python version. Please upgrade to the latest Python version, or at least Python 3.11, and then update google.api_core.
warnings.warn(message, FutureWarning)
2026-10-26 19:30:05.386077: W tensorflow/compiler/tf2tensorrt/utils/py_utils.cc:38] TF-TRT Warning: Could not find TensorRT
I1026 19:30:06.524088 140448793534912 run_deepsomatic.py:677] Creating a directory for intermediate results in tmp
***** Intermediate results will be written to tmp in docker. ****
***** Running the command:*****
time seq 0 11 | parallel -q --halt 2 --line-buffer /opt/deepvariant/bin/make_examples_somatic --mode calling --ref "Homo_sapiens_assembly38.fasta" --reads_tumor "HCC1395T.recal.cram" --reads_normal "HCC1395N.recal.cram" --examples "tmp/make_examples_somatic.tfrecord@12.gz" --checkpoint "/opt/models/deepsomatic/wes" --checkpoint_json "/opt/models/deepsomatic/wes/model.example_info.json" --gvcf "tmp/gvcf.tfrecord@12.gz" --regions "chr17_38877931-38878296.bed" --task {}
I1026 19:30:06.524912 140448793534912 run_deepsomatic.py:938] env = {'R_PROFILE_USER': '/.Rprofile', 'FUSION_LICENSE_TOKEN': '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... Copy code
nextflow run '<https://github.com/nf-core/sarek>' -name sarek_test_full_aws -params-file '<https://api.cloud.seqera.io/ephemeral/ZPTFhXYFA7PC5W69H8SKIg.json>' -with-tower -r 6e9b164daa2a54c98f7dda538645d340c561ac24 -profile test_full_aws