A community effort to collect a curated set of analysis pipelines built using Nextflow.

nf-core

if you update the full size yml with this: <https://github.com/nf-core/tools/pull/4501/changes|github.com/nf-core/tools/pull/4501/changes> it should get passed the error or alternatively merge in the template update

Hello Rike, I added the changes to my 'dev' and relaunch the pipeline but it didnt work.. What can I be missing :D

can you please link me the failing action or pipeline run

<https://cloud.seqera.io/orgs/nf-core/workspaces/AWSmegatests/watch/4zYRB7pMHMvGXd/configuration|cloud.seqera.io/orgs/…/configuration>

I think aws configuration is not being copied to platform

sorry <https://github.com/nf-core/variantbenchmarking/actions/runs/40656879038|github.com/nf-core/variantbenchmarking/…/40656879038>

it's shown as skipped? where is the execution that triggered the failing run in platform

I relaunch the pipeline from the platform <https://cloud.seqera.io/orgs/nf-core/workspaces/AWSmegatests/watch|cloud.seqera.io/orgs/…/watch>

but how did you get it there? we need to figue out why the action is not adding the config update to the API call to platform

I think this is the original one <https://github.com/nf-core/variantbenchmarking/actions/runs/39972491275|github.com/nf-core/variantbenchmarking/…/39972491275>

I am confused :smile: I rerun this one <https://cloud.seqera.io/orgs/nf-core/workspaces/AWSmegatests/watch/N41trB0sxSM2r/logs|cloud.seqera.io/orgs/…/logs> (which was automatically pushed from github actions)

ok so It is not picked up by the github action
```    workspace_id: 59994744926013
    access_token: ***
    compute_env: aws_ireland_fusionv2_nvme_cpu_spot
    revision: dev
    workdir: <s3://nf-core-awsmegatests/work/variantbenchmarking/work-dev>
    nextflow_config: plugins {
    id 'nf-slack@0.5.0'
  }```
are you sure that this was on a git sha that had that commit in already?

works here: <https://cloud.seqera.io/orgs/nf-core/workspaces/AWSmegatests/watch/5uq3Xm8gkSptVA/configuration|cloud.seqera.io/orgs/…/configuration>
```plugins {
  id 'nf-slack@0.5.0'
  id 'nf-schema@2.7.2'
}
slack {
  enabled = true
  bot {
    token = 'xoxb-482441985799-10537029949076-t09RU1r1Z3dgMeKY1vWbd8i9'
    channel = 'variantbenchmarking'
  }
  onStart {
    enabled = false
  }
  onComplete {
    message = ':white_check_mark: *variantbenchmarking/test_full* completed successfully! :tada:'
  }
  onError {
    message = ':x: *variantbenchmarking/test_full* failed :crying_cat_face:'
  }
}```
:shrug:

latest push I had to 'dev' was yesterday and I rerun it today.. so it must be there already

ok the run you linked was from 5 days ago. Mayvbe double check the shas on when you added the plugin and merged it to dev just to be sure, but I don't see anything to be concerned about