Hi! I was wondering if there is an easy way to provide a custom

known_fusion_data.38.csv

file to a run? Like a flag or similar?

Hi Kristine! There isn't a dedicated flag for this, but you can override it with a custom config file. All WiGiTS resource files are defined under params.hmf_data_paths, and their paths are resolved relative to ref_data_hmf_data_path. So you can put your custom file inside your locally staged (extracted) hmf_data directory and point the param at it:

params {

ref_data_hmf_data_path = '/path/to/hmftools_data/'

hmf_data_paths {

'38' {

known_fusion_data = 'custom/known_fusion_data.38.csv'

}

}

}

Then run with that config

Great! We will try this, thank you so much!