❌ ampliseq/test_full failed 😿 Run Name spontaneous_bose Duration 811ms Status ❌ Failed Error Message

Script compilation error
- file : /.nextflow/assets/.repos/nf-core/ampliseq/clones/591c3322a015feef7304c2110eea925d6c5b9f98/main.nf
- cause: Unexpected input: '{' @ line 76, column 8.
   params {
          ^

1 error

NOTE: If this is the beginning of a process or workflow, there may be a syntax error in the body, such as a missing or extra comma, for which a more specific error message could not be produced.

Command Line

nextflow run '<https://github.com/nf-core/ampliseq>' -name spontaneous_bose -params-file '<https://api.cloud.seqera.io/ephemeral/HTE3H8F_1sMf42Mk8KECYA.json>' -with-tower -r dev -profile test_full,aws_scratch

Oct 21, 2026 at 12:43 PM

Thats no news any more. Thats because the parser is set by default to v1, but we (and many other nf-core pipelines) need now v2. I'll fix that for the release run, but there is no way to do that before, afaik.

Hello! I got good news for you: github.com/nf-core/tools/pull/4518/changes you can set the parser flag now, plus the action should be much more stable. I am just waiting for Matthias to give his blessings so we can merge this into the template. I have tested this successfully on sarek and airrflow

Thanks! Tried the c&p 🙂