A community effort to collect a curated set of analysis pipelines built using Nextflow.

nf-core

:x: *sarek/test_full_aws* failed :crying_cat_face: *Run Name*
sarek_test_full_aws *Duration*
6h 21m 7s *Status*
:x: Failed *Error Message*
```12:23AM INF [seqera-fusion] OpenTelemetry collector initialized component=metrics format=json
12:23AM INF [seqera-fusion] setting up AWS Batch spot instance monitoring provider=aws-batch
12:23AM INF [seqera-fusion] instance metadata ami-id=ami-0acc5dd6b31082def instance-id=i-0281b0e920eb8a6e8 instance-type=r6id.4xlarge
12:23AM INF [seqera-fusion] starting incremental snapshot timer interval=300000
gzip: stdout: Broken pipe
2026-10-16 00:23:17 - INFO: Disabling --hgvs; using --offline and no FASTA file found
12:28AM INF [seqera-fusion] sending incremental snapshot signal (SIGUSR1)
12:28AM ERR [seqera-fusion] Failed to fetch entry size. This may indicate storage access issues. Check `error` field for details and report this issue if it persists. error="operation error S3: HeadObject, https response error StatusCode: 0, RequestID: , HostID: , canceled, context canceled" goid=498 operation=Readlink path=/s3/annotation-cache/vep_cache/116_GRCh38/homo_sapiens/116_GRCh38/16/all_vars.gz
[2026-10-16 00:28:17.949] [WARN] Warn  (dumprestore.c:235): predump failed, starting new chain for future dumps
[2026-10-16 00:28:17.949] [ERROR] Error (exec.c:102): incremental dump failed with code: -52
-------------------- EXCEPTION --------------------
MSG: 
ERROR: Forked process(es) died: read-through of cross-process communication detected
STACK Bio::EnsEMBL::VEP::Runner::_forked_buffer_to_output /opt/conda/share/ensembl-vep-116.0-0/modules/Bio/EnsEMBL/VEP/Runner.pm:562
STACK Bio::EnsEMBL::VEP::Runner::next_output_line /opt/conda/share/ensembl-vep-116.0-0/modules/Bio/EnsEMBL/VEP/Runner.pm:367
STACK Bio::EnsEMBL::VEP::Runner::run /opt/conda/share/ensembl-vep-116.0-0/modules/Bio/EnsEMBL/VEP/Runner.pm:208
STACK toplevel /opt/conda/bin/vep:46
Date (localtime)    = Fri Oct 16 00:29:05 2026
Ensembl API version = 116
---------------------------------------------------
gzip: stdout: Broken pipe
FUSION_GPU_USED=false
Fusion Info:
    available_disk: start:943GB, min:902GB, max:943GB, end:920GB
...``` *Command Line*
```nextflow run '<https://github.com/nf-core/sarek>' -name sarek_test_full_aws -params-file '<https://api.cloud.seqera.io/ephemeral/c9z3df3l5Iq_zOAZdtQGAA.json>' -with-tower -r dev -profile test_full_aws``` Oct 16, 2026 at 12:29 AM