I have a discussion about some (possibly) varlociraptor related bugs going on here github.com/nf-core/sarek/issues/2231 and here github.com/nf-core/sarek/issues/2230. I added a small fix for one of them and that seems to have solved both issues (branch

fix-vc

) however now the consensus seems to be missing. I was wondering if something regarding the consensus generation was changed in the current dev branch and its just broken there?

have you check current dev?

I asked the user but they did not yet and I did not have the time to try and reproduce that aswell

hm there shouldn't have been a change to my knowledge

hm ok weird

No dev meeting for me today 'cause travelling unfortunately

But I think in the mean time we can merge this: github.com/nf-core/sarek/pull/2300