Hi all! First-time contributor here, I've opened a PR adding a modkit/dmr module (thin wrapper around modkit dmr pair, for differential methylation between a pair of bedMethyl samples, haplotypes, tumor/normal, etc.): nf-core/modules#13021 It needs a companion test-data PR since there's no bedmethyl fixture in test-datasets yet (generated from the existing phased nanopore BAM modkit/pileup's own tests already use, so no new BAM/reference needed): nf-core/test-datasets#2289 Both are ready for review, happy to make changes if anything's off convention-wise. Thanks!

instead of adding the new dataset, why dont you add nf-co.re/modules/modkit_pileup process to your test?

Good call, done. Test now chains modkit/pileup (--phased) + htslib/bgziptabix in a setup block instead of a committed fixture, so the new dataset isn't needed anymore. Closed that PR. Pushed to nf-core/modules#13021.