A community effort to collect a curated set of analysis pipelines built using Nextflow.

nf-core

A new request to upload a container to <http://quay.io|quay.io> has been made!

• *Container URL:* Instructions to build at <https://github.com/nf-core/modules/tree/master/modules/nf-core/cellranger#readme>
• *Why is this needed?:* Update cellranger from version 10.0.0 to 10.1.0
• *Confirmation:*
    ◦ This can't be done through the usual Bioconda
Note: only containers with a stable version will be accepted (ie. not `latest`)

Core team will add this container to <http://quay.io|quay.io>. Please react to the message with :white_check_mark: when this is done.
[This process is not automated]

submitter: <@ULTFN9U76>

Right, the idea is that you build it for us <@ULTFN9U76> :sweat_smile:

Then tell us the container URI and we just do a pull / push

10x now has a click through license (or perhaps this was in place before?), I don't believe the terms allow for redistribution. <@UG3J99VUK> is listed as an author, how did this work previously for version 10.0.0?

We have an email thread where we asked nicely and they basically say it's ok for us to do so. It's been a little while since I re-read it to check the details, but this comes up every time. 'cc <@UE4K7EZ4G>

We have agreed to put in disclaimers in the scrnaseq pipeline repo for example, and make clear that we're literally taking this for the pipeline and 10x is not affiliated with it etc pp.

`heuermh/nf-core-cellranger:10.1.0` on dockerhub

<https://hub.docker.com/repository/docker/heuermh/nf-core-cellranger/tags/10.1.0/sha256-47a7818939eeb0fb36056ec771195ce36c2103ebf711d8db2f6f98bb5122ddbe|hub.docker.com/repository/docker/heuermh/nf-core-cellranger/tags/…/sha256-47a78…>

Also started a draft pull request
<https://github.com/nf-core/modules/pull/13012|github.com/nf-core/modules/pull/13012>

Sorry, <@UPC8CHDKQ> is on call this week but I know she's slammed with work for the Nextflow Summit (I know this because I'm the one haranguing her about it :laughing: )

Looks like <@U03HEFYUW3H> is on call next week