❌ genomeassembler/test_full failed 😿 Run Name infallible_borg_3 Duration 37m 27s Status ❌ Failed Error Message

6:20AM INF [seqera-fusion] setting up AWS Batch spot instance monitoring provider=aws-batch
6:20AM INF [seqera-fusion] instance metadata ami-id=ami-0acc5dd6b31082def instance-id=i-05bcfbf2ecec05fac instance-type=c6id.8xlarge
6:20AM INF [seqera-fusion] starting incremental snapshot timer interval=300000
Looking to launch executable "/opt/conda/bin/bwa-mem2.avx512bw", simd = .avx512bw
Launching executable "/opt/conda/bin/bwa-mem2.avx512bw"
[bwa_index] Pack FASTA... 1.06 sec
* Entering FMI_search
init ticks = 9651068428
ref seq len = 315317090
binary seq ticks = 6576708296
build suffix-array ticks = 99557304730
ref_seq_len = 315317090
count = 0, 98084247, 157658545, 217232843, 315317090
BWT[42216469] = 4
CP_SHIFT = 6, CP_MASK = 63
sizeof CP_OCC = 64
/fusion/s3/nf-core-awsmegatests/work/genomeassembler/work-847c832ae9b9fc000e654d70d537bb7b28d73dcc/82/af7cfb82430e3359ea4d2bac78cae1/.command.sh: line 7:    92 Killed                  bwa-mem2 index -p bwamem2/test_hifiasm_hic_bwamem_index test_hifiasm_hic.fa.gz
FUSION_GPU_USED=false
Fusion Info:
    available_disk: start:1.9TB, min:1.9TB, max:1.9TB, end:1.9TB
    clone_namespace: false
    download: 38.02MB, drops:0, skip:0, sync:0, req:1
    fusion_version: 2.5.14-20e904e
    kernel_version: 6.1
    max_open_files: 1048576
    upload: 338.31MB, drops:0, skip:0, sync:11, req:13

Command Line

nextflow run '<https://github.com/nf-core/genomeassembler>' -name infallible_borg_3 -params-file '<https://api.cloud.seqera.io/ephemeral/kHTqMes5CYnJhAsmwgYziQ.json>' -with-tower -r 847c832ae9b9fc000e654d70d537bb7b28d73dcc -profile test_full -resume 2b9fbf16-05be-400a-8d6c-74c4185566b5

Sep 17, 2026 at 6:21 AM