:x: genomeassembler/test_full failed :crying_cat_f...
# genomeassemblerf
Full test notifications
09/16/2026, 3:57 PM❌ genomeassembler/test_full failed 😿 Run Name
infallible_borg Duration
7h 23m 27s Status
❌ Failed Error Message
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(more omitted..)
[2026-09-16 14:55:46] INFO: Reads N50/N90: 5906 / 1777
[2026-09-16 14:55:46] INFO: Minimum overlap set to 2000
[2026-09-16 14:55:46] INFO: >>>STAGE: assembly
[2026-09-16 14:55:46] INFO: Assembling disjointigs
[2026-09-16 14:55:46] INFO: Reading sequences
2:57PM INF [seqera-fusion] sending incremental snapshot signal (SIGUSR1)
[2026-09-16 14:59:02] INFO: Building minimizer index
[2026-09-16 14:59:02] INFO: Pre-calculating index storage
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[2026-09-16 14:59:52] INFO: Filling index
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[2026-09-16 15:00:37] INFO: Extending reads
[2026-09-16 15:01:23] INFO: Overlap-based coverage: 56
[2026-09-16 15:01:23] INFO: Median overlap divergence: 0.034713
3:02PM INF [seqera-fusion] sending incremental snapshot signal (SIGUSR1)
3:07PM INF [seqera-fusion] sending incremental snapshot signal (SIGUSR1)
3:12PM INF [seqera-fusion] sending incremental snapshot signal (SIGUSR1)
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[2026-09-16 15:16:39] INFO: Assembled 17697 disjointigs
[2026-09-16 15:16:47] INFO: Generating sequence
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[2026-09-16 15:16:57] INFO: Filtering contained disjointigs
3:17PM INF [seqera-fusion] sending incremental snapshot signal (SIGUSR1)
3:22PM INF [seqera-fusion] sending incremental snapshot signal (SIGUSR1)
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[2026-09-16 15:23:05] INFO: Contained seqs: 14134
[2026-09-16 15:23:14] INFO: >>>STAGE: consensus
[2026-09-16 15:23:14] INFO: Running Minimap2
3:27PM INF [seqera-fusion] sending incremental snapshot signal (SIGUSR1)
3:32PM INF [seqera-fusion] sending incremental snapshot signal (SIGUSR1)
3:37PM INF [seqera-fusion] sending incremental snapshot signal (SIGUSR1)
3:42PM INF [seqera-fusion] sending incremental snapshot signal (SIGUSR1)
3:47PM INF [seqera-fusion] sending incremental snapshot signal (SIGUSR1)
3:52PM INF [seqera-fusion] sending incremental snapshot signal (SIGUSR1)
[202... Copy code
nextflow run '<https://github.com/nf-core/genomeassembler>' -name infallible_borg -params-file '<https://api.cloud.seqera.io/ephemeral/_uWRB1tqbxwQZ65QbMHQag.json>' -with-tower -r 847c832ae9b9fc000e654d70d537bb7b28d73dcc -profile test_full